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Routine: ONCOCFL1

ONCOCFL1.m

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  1. ONCOCFL1 ;HINES OIFO/GWB - [CF Automatic Casefinding-Lab Search] ;10/21/11
  1. ;;2.2;ONCOLOGY;**1,10,15**;Jul 31, 2013;Build 5
  1. ;
  1. ;patch 10 - added new eligible cases
  1. ;
  1. EN ;Start Date default
  1. S SDDEF=$P(^ONCO(160.1,OSP,0),U,5)
  1. I SDDEF="" S SDDEF=DT
  1. S SDDEF=$E(SDDEF,4,5)_"-"_$E(SDDEF,6,7)_"-"_($E(SDDEF,1,3)+1700)
  1. ;
  1. SD ;Start Date
  1. W !
  1. K DIR
  1. S DIR(0)="D"
  1. S DIR("A")=" Start Date"
  1. S DIR("B")=SDDEF
  1. D ^DIR
  1. G EX:(Y="")!(Y[U)
  1. I (Y>DT) W " Future dates not allowed" G SD
  1. S (LRSDT,X)=Y D DD^%DT W " ",Y
  1. ;
  1. ED ;End Date
  1. K DIR
  1. S DIR(0)="D"
  1. S DIR("A")=" End Date"
  1. D ^DIR
  1. G EX:(Y="")!(Y[U)
  1. I (Y<LRSDT) W " Invalid date sequence" G SD
  1. I (Y>DT) W " Future dates not allowed" G ED
  1. S $P(^ONCO(160.1,OSP,0),U,5)=Y
  1. S (LRLDT,X)=Y D DD^%DT W " ",Y
  1. S Y=LRSDT D D^ONCOLRU S LRSTR=Y
  1. S Y=LRLDT D D^ONCOLRU S LRLST=Y
  1. W !
  1. K DIR
  1. S DIR(0)="Y"
  1. S DIR("A")=" Dates OK"
  1. S DIR("B")="Y"
  1. D ^DIR
  1. G EX:(Y="")!(Y[U)
  1. G EN:'Y
  1. ;Include Squamous and Basal cell neoplasms (Y/N?)
  1. W !
  1. S SBCIND="NO"
  1. K DIR
  1. S DIR(0)="Y"
  1. S DIR("A")=" Include Squamous and Basal cell neoplasms"
  1. S DIR("B")="Yes"
  1. S DIR("?")=" "
  1. S DIR("?",1)=" Answer 'YES' if you want to include squamous and basal cell neoplasms."
  1. S DIR("?",2)=" Answer 'NO' if you want to exclude these neoplasms."
  1. D ^DIR
  1. G EX:(Y="")!(Y[U)
  1. S:Y=1 SBCIND="YES"
  1. K DIR
  1. ;patch 10 Add Urinary Tract Sites
  1. S ONCO("SD")=LRSDT,ONCO("ED")=LRLDT
  1. S LRSDT=LRSDT-.01,LRLDT=LRLDT+.99
  1. F X=8,9 F Y=1,2,3,4,5,6,7,9 S Z=X_"***"_Y,LRM(Z)=5,LRN(Z)=Z
  1. S LRM(67654)=5,LRN(67654)=67654
  1. S LRM(67664)=5,LRN(67664)=67664
  1. S LRM(67674)=5,LRN(67674)=67674
  1. S LRM(67684)=5,LRN(67684)=67684
  1. S LRM(69760)=5,LRN(69760)=69760
  1. S LRM(74000)=5,LRN(74000)=74000
  1. S LRM(74006)=5,LRN(74006)=74006
  1. S LRM(74007)=5,LRN(74007)=74007
  1. S LRM(74008)=5,LRN(74008)=74008
  1. W !!?10,"This option will search for ICD-O morphology codes 800-998.",!
  1. W !?10,"It will also search for High Grade Dysplasia of Stomach, Colon"
  1. W !?10,"and Esophagus cases.",!
  1. W !?10,"Exceptions to the above search criteria:",!
  1. W !?10,"Behavior Code /0 (Benign) codes will be excluded."
  1. W:SBCIND="NO" !?10,"Squamous cell neoplasms (805-808) of the skin will be excluded."
  1. W:SBCIND="NO" !?10,"Basal cell neoplasms (809) will be excluded."
  1. W !?10,"Benign tumors of the central nervous system will be included."
  1. W !
  1. S %ZIS="Q" D ^%ZIS I POP G EX
  1. I '$D(IO("Q")) D SER^ONCOCFL1 G EX
  1. S ZTRTN="SER^ONCOCFL1",ZTSAVE("LR*")="",ZTSAVE("ONCO*")="",ZTSAVE("SBCIND")=""
  1. S ZTDESC="ONCOLOGY LAB SEARCH"
  1. D ^%ZTLOAD
  1. K ZTDESC,ZTRTN,ZTSAVE
  1. G EX
  1. ;
  1. SER ;Search LAB DATA (63) file
  1. ;Supported by IA #525
  1. S AFFDIV=$G(DUZ(2)),ONCDIVSP=$O(^ONCO(160.1,"C",AFFDIV,""))
  1. I ONCDIVSP="" W !!,"User does not have an associated DIVISION.",!! G EX
  1. F Z=0:0 S Z=$O(^ONCO(160.1,ONCDIVSP,6,Z)) Q:Z'>0 S AFFDIV=AFFDIV_U_$G(^ONCO(160.1,ONCDIVSP,6,Z,0))
  1. K ^TMP($J),^TMP("ONCO",$J)
  1. D SNOMED
  1. S ONSDT=LRSDT,ONLDT=LRLDT
  1. S ^TMP("ONCO",$J,0)=0
  1. F LRSS="SP","CY","EM","AU" S LRXR="A"_LRSS,LRSDT=ONSDT,LRLDT=ONLDT D LOOP
  1. S LRDFN=0
  1. F S LRDFN=$O(^TMP($J,LRDFN)) G RPT:LRDFN="" S LRSDT=0 F S LRSDT=$O(^TMP($J,LRDFN,LRSDT)) Q:LRSDT'>0 S LD=^(LRSDT),LRSS=$P(LD,U),LRI=$P(LD,U,6),XDT=$S(LRSS="AU":$P(^LR(LRDFN,LRSS),U),1:$P(^LR(LRDFN,LRSS,LRI,0),U,1)) S XDT=$P(XDT,".",1) D CK
  1. ;
  1. CK ;Check ONCOLOGY PATIENT (160) file
  1. D DIV Q:DVMTCH=0
  1. S XD1=^LR(LRDFN,0) Q:$P(XD1,U,2)'=2 S X=$P(XD1,U,3) Q:'$D(^DPT(X))
  1. S X=X_";DPT(",XD0=$O(^ONCO(160,"B",X,0)),ONCIEN=XD0
  1. I XD0="" K DO S D="B",DIC="^ONCO(160,",DIC(0)="Z" D FILE^DICN K DO S ONCIEN=+Y D SET Q
  1. I XD0'="" S ONCDIVS="",ONCS="" F S ONCS=$O(^ONCO(160,XD0,"SUS","C",ONCS)) Q:ONCS'>0 S ONCDIVS=ONCDIVS_U_ONCS
  1. I ONCDIVS[DUZ(2) Q
  1. G SET:'$D(^ONCO(165.5,"C",ONCIEN)) S XD2=0 F S XD2=$O(^ONCO(165.5,"C",ONCIEN,XD2)) Q:XD2="" I $$DIV^ONCFUNC(XD2)=DUZ(2) S XDX=$P($G(^ONCO(165.5,+XD2,0)),U,16) Q:XDT=XDX I $P($G(^ONCO(165.5,+XD2,1)),U,10)=XDT Q
  1. Q:XD2'="" D SET Q
  1. ;
  1. SET ;Create SUSPENSE (160.075) record
  1. K DD,DO
  1. S DA(1)=ONCIEN,DIC="^ONCO(160,"_DA(1)_",""SUS"","
  1. S DIC(0)="L",DIC("P")=$P(^DD(160,75,0),U,2),X=XDT
  1. D FILE^DICN K DO
  1. S ^TMP("ONCO",$J,0)=^TMP("ONCO",$J,0)+1
  1. K DIE S DA(1)=ONCIEN,DIE="^ONCO(160,"_DA(1)_",""SUS"","
  1. S (ONCSUB,DA)=+Y,SR="L"_$E(LRSS),$P(^ONCO(160,ONCIEN,0),U,2)=LRDFN
  1. S ONCMRPH=$E($P(LD,U,4),1,5) S:$E(ONCMRPH,5)=6 $E(ONCMRPH,5)=3 I '$D(^ONCO(164.1,ONCMRPH)) S ONCMRPH=""
  1. S DR="1///^S X=DT;2///^S X=SR;3////^S X=DUZ(2);4////^S X=$P(LD,U,2);5////^S X=$P(LD,U,3);10////^S X=ONCMRPH;11///^S X=LRI;13////^S X=$P(LD,U,7)"
  1. D ^DIE
  1. Q
  1. ;
  1. LOOP F S LRSDT=$O(^LR(LRXR,LRSDT)) Q:'LRSDT!(LRSDT>LRLDT) D LRDFN
  1. Q
  1. ;
  1. LRDFN S LRDFN=0 F S LRDFN=$O(^LR(LRXR,LRSDT,LRDFN)) Q:'LRDFN D @$S(LRSS'="AU":"LRI",1:"AU")
  1. Q
  1. ;
  1. LRI S LRI=0 F S LRI=$O(^LR(LRXR,LRSDT,LRDFN,LRI)) Q:'LRI D T
  1. Q
  1. ;
  1. T S T=0 F S T=$O(^LR(LRDFN,LRSS,LRI,2,T)) Q:'T S LRT=+^(T,0),TIS=$P($G(^LAB(61,LRT,0)),U,1),SNOMED=$P($G(^LAB(61,LRT,0)),U,2) D M
  1. Q
  1. ;
  1. M S M=0 F S M=$O(^LR(LRDFN,LRSS,LRI,2,T,2,M)) Q:'M S X=^(M,0),LRD=+X,LRM=$P(X,U,2) D MX I I Q
  1. S DZX=0 F S DZX=$O(^LR(LRDFN,LRSS,LRI,2,T,1,DZX)) Q:'DZX D
  1. .S DZPTR=$G(^LR(LRDFN,LRSS,LRI,2,T,1,DZX,0)) I DZPTR="" Q
  1. .S DZCODE=$P($G(^LAB(61.4,+DZPTR,0)),U,2) I DZCODE="" Q
  1. .I (DZCODE=4006)!((DZCODE>4078)&(DZCODE<4085)) D
  1. ..S DZMORP=$S(DZCODE=4006:99833,DZCODE=4079:99803,1:99823)
  1. ..S ^TMP($J,LRDFN,LRSDT)=LRSS_U_U_LRT_U_DZMORP_U_TIS_U_LRI_U_DZPTR
  1. Q
  1. ;
  1. MX Q:'$D(^LAB(61.1,LRD,0))
  1. S W=^LAB(61.1,LRD,0),X=$P(W,U,2),Y=0 F Z=1:1 S Y=$O(LRN(Y)) Q:Y="" S Y(1)=LRM(Y),Y(2)=LRN(Y) D Y I I S ^TMP($J,LRDFN,LRSDT)=LRSS_U_LRD_U_LRT_U_X_U_TIS_U_LRI
  1. Q
  1. ;
  1. AU ;AUTOPSY
  1. S LRI=9999999,T=0 F S T=$O(^LR(LRDFN,"AY",T)) Q:'T S LRT=+^(T,0),TIS=$P($G(^LAB(61,LRT,0)),U),SNOMED=$P($G(^LAB(61,LRT,0)),U,2) D AUM
  1. Q
  1. ;
  1. AUM S M=0 F S M=$O(^LR(LRDFN,"AY",T,2,M)) Q:'M S X=^(M,0),LRD=+X,LRM=$P(X,U,2) D MX
  1. Q
  1. ;
  1. Y ;Check for eligible cases
  1. ;Basal cell carcinomas
  1. I SBCIND="NO",$E(X,1,3)=809 S I=0 Q
  1. ;Benign brain tumors
  1. I SNOMED'="",($E(SNOMED,1,2)?1"X"1N)!($D(BBT(SNOMED))),$E(X,1)>7 S I=1 Q
  1. ;Squamous cell neoplasms of the skin
  1. I SBCIND="NO",($E(X,1,3)=805)!($E(X,1,3)=806)!($E(X,1,3)=807)!($E(X,1,3)=808),($E(SNOMED,1,2)="01")!($E(SNOMED,1,2)="02") S I=0 Q
  1. I $E(X,1,5)=Y(2) D Q
  1. .S I=1
  1. .I (X=74000)!(X=74006)!(X=74007)!(X=74008),($E(SNOMED,1,2)'=62)&($E(SNOMED,1,2)'=63)&($E(SNOMED,1,2)'=67) S I=0
  1. S I=1 F I(1)=1:1:Y(1) S I(2)=$E(Y(2),I(1)) I I(2)'="*",I(2)'=$E(X,I(1)) S I=0 Q
  1. Q
  1. ;
  1. RPT ;Report
  1. N ONCOST,ONCOEN
  1. S ONCOST="L",ONCOEN="LS" G RPT^ONCOCFL
  1. ;
  1. DIV ;Check division
  1. ;Supported by IA #5343
  1. S DVMTCH=1,INST=""
  1. I LRSS="AU" D
  1. .S LBACC=$P($G(^LR(LRDFN,LRSS)),U,6)
  1. .S LBYEAR=$P($G(^LR(LRDFN,LRSS)),U,1)
  1. I LRSS'="AU" D
  1. .S LBACC=$P($G(^LR(LRDFN,LRSS,LRI,0)),U,6)
  1. .S LBYEAR=$P($G(^LR(LRDFN,LRSS,LRI,0)),U,1)
  1. I (LBACC="")!(LBYEAR="") Q
  1. I LBACC["LEGACY" S DVMTCH=0 Q
  1. S LBAREA=$P(LBACC," ",1) I LBAREA="" Q
  1. S LBNUM=$P(LBACC," ",3) I LBNUM="" Q
  1. S ACCIEN=$O(^LRO(68,"B",LBAREA,"")) I ACCIEN="" Q
  1. S LBYEAR=$E(LBYEAR,1,3)_"0000"
  1. S INST=$G(^LRO(68,ACCIEN,1,LBYEAR,1,LBNUM,.4)) I INST="" Q
  1. I AFFDIV'[INST S DVMTCH=0
  1. Q
  1. ;
  1. SNOMED ;Build SNOMED array for benign brain tumors
  1. S BBT(45000)=""
  1. S BBT(45010)=""
  1. S BBT(45020)=""
  1. S BBT(45030)=""
  1. S BBT(45100)=""
  1. S BBT(45110)=""
  1. S BBT(45120)=""
  1. S BBT(45300)=""
  1. S BBT(45300)=""
  1. S BBT(45301)=""
  1. S BBT(45302)=""
  1. S BBT(45303)=""
  1. S BBT(45304)=""
  1. S BBT(45305)=""
  1. S BBT(45520)=""
  1. S BBT(45521)=""
  1. S BBT(45522)=""
  1. S BBT(45523)=""
  1. S BBT(45524)=""
  1. S BBT(45525)=""
  1. Q
  1. ;
  1. EX ;KILL variables
  1. D ^%ZISC
  1. K %ZIS
  1. K ACCIEN,AFFDIV,BBT,D,DA,DIC,DIE,DIR,DR,DVMTCH,DZCODE,DZMORP,DZPTR,DZX
  1. K I,INST,LBACC,LBAREA,LBNUM,LBYEAR,LD,LRD,LRDFN,LRI,LRLDT,LRLST,LRM,LRN
  1. K LRSDT,LRSS,LRSTR,LRT,LRXR,M,ONCDIVS,ONCDIVSP,ONCIEN,ONCMRPH,ONCO,ONCS
  1. K ONCSUB,ONLDT,ONSDT,OSP,POP,SDDEF,SNOMED,SR,T,TIS,W,X,XD0,XD1,XD2,XDT
  1. K XDX,Y,Z,SBCIND
  1. Q