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Routine: RORHL121

RORHL121.m

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  1. RORHL121 ;HOIFO/BH - HL7 MICROBIOLOGY DATA: OBX ; 8/31/05 1:16pm
  1. ;;1.5;CLINICAL CASE REGISTRIES;;Feb 17, 2006
  1. ;
  1. Q
  1. ;
  1. FUNGUS ;***** Process Fungus/Yeast
  1. N FYIEN,RORFYIEN,RORFYID,RORFYCM
  1. ;
  1. S RORFYID=$$SEGID("FUNG","Fungus-Yeast",CS)
  1. S RORFYCM=$$SEGID("FUNGC","F-Y Comment",CS)
  1. S RORFYIEN=""
  1. F S RORFYIEN=$O(@RORREF@(9,RORFYIEN)) Q:'RORFYIEN D
  1. . S TMP=$G(@RORREF@(9,RORFYIEN,0,.01,"E"))
  1. . Q:TMP=""
  1. . D SETOBX(RORFYID,,TMP,$G(@RORREF@(9,RORFYIEN,0,1,"I")))
  1. . ;---
  1. . S FYIEN=""
  1. . F S FYIEN=$O(@RORREF@(9,RORFYIEN,1,FYIEN)) Q:FYIEN="" D
  1. . . S TMP=$G(@RORREF@(9,RORFYIEN,1,FYIEN,0,.01,"E"))
  1. . . D:TMP'="" SETOBX(RORFYCM,,TMP)
  1. Q
  1. ;
  1. BACSP ;***** Bacteriology Smear/Prep
  1. ;
  1. N RORBSPID,RORBSP
  1. S RORBSPID=$$SEGID("BACT-SP","Bact Smear/Prep",CS)
  1. ;
  1. S RORBSP=""
  1. F S RORBSP=$O(@RORREF@(25,RORBSP)) Q:'RORBSP D
  1. . S TMP=$G(@RORREF@(25,RORBSP,0,.01,"E"))
  1. . D:TMP'="" SETOBX(RORBSPID,,TMP)
  1. Q
  1. ;
  1. MYCO ;***** Mycobacterium
  1. N RORMYD,RORMYD1,RORDF,RORDO,RORMYIEN,RORMYID,RORMYCM,MYIEN,RORMYF,RORMYO,TMP,TMP1
  1. S RORMYID=$$SEGID("MYCO","Mycobacterium",CS)
  1. S RORMYCM=$$SEGID("MYCOC","Myco Comment",CS)
  1. S RORMYF=$$SEGID("MYCOAF","Myco Anti-F",CS)
  1. S RORMYO=$$SEGID("MYCOAO","Myco Anti-O",CS)
  1. ;
  1. S RORMYIEN=""
  1. F S RORMYIEN=$O(@RORREF@(12,RORMYIEN)) Q:'RORMYIEN D
  1. . S TMP=$G(@RORREF@(12,RORMYIEN,0,.01,"E"))
  1. . Q:TMP=""
  1. . D SETOBX(RORMYID,,TMP,$G(@RORREF@(12,RORMYIEN,0,1,"I")))
  1. . ;---
  1. . S MYIEN=""
  1. . F S MYIEN=$O(@RORREF@(12,RORMYIEN,1,MYIEN)) Q:MYIEN="" D
  1. . . S TMP=$G(@RORREF@(12,RORMYIEN,1,MYIEN,0,.01,"E"))
  1. . . D:TMP'="" SETOBX(RORMYCM,,TMP)
  1. . ;
  1. . S RORMYD=2
  1. . F S RORMYD=$O(@RORREF@(12,RORMYIEN,0,RORMYD)) Q:'RORMYD!(RORMYD'<3) D
  1. . . S TMP=$G(@RORREF@(12,RORMYIEN,0,RORMYD,"I")) Q:TMP?."^"
  1. . . D SETOBX(RORMYF,$P(TMP,U),$P(TMP,U,2))
  1. . ;
  1. . S RORMYD1=4
  1. . F S RORMYD1=$O(@RORREF@(12,RORMYIEN,0,RORMYD1)) Q:'RORMYD1!(RORMYD1'<56) D
  1. . . S TMP=$G(@RORREF@(12,RORMYIEN,0,RORMYD1,"I")) Q:TMP?."^"
  1. . . D SETOBX(RORMYO,$P(TMP,U),$P(TMP,U,2))
  1. Q
  1. ;
  1. MYCOSP ;***** Mycology Smear Prep
  1. ;
  1. N RORMSPID,RORMSPIN
  1. S RORMSPID=$$SEGID("MYCO-SP","Mycology Smear/Prep",CS)
  1. ;
  1. S RORMSPIN=""
  1. F S RORMSPIN=$O(@RORREF@(15,RORMSPIN)) Q:'RORMSPIN D
  1. . S TMP=$G(@RORREF@(15,RORMSPIN,0,.01,"E"))
  1. . D:TMP'="" SETOBX(RORMSPID,,TMP)
  1. Q
  1. ;
  1. ;***** MICROBIOLOGY OBX SEGMENT(S) BUILDER
  1. ;
  1. ; RORREF Global reference for MI entry
  1. ;
  1. ; Return Values:
  1. ; <0 Error code
  1. ; 0 Ok
  1. ; >0 Non-fatal error(s)
  1. ;
  1. OBX(RORREF) ;
  1. N CS,ERRCNT,RORTBST,IEN,RC,RORID,TMP
  1. S (ERRCNT,RC)=0
  1. D ECH^RORHL7(.CS)
  1. ;
  1. ;--- Process TB data if Final report
  1. S RORTBST=$G(@RORREF@(0,23,"I"))
  1. I RORTBST="F" D
  1. . N RORTBDTE,RORTBAFS,RORTBQTY
  1. . S RORID=$$SEGID("AFB-SP","TB Report",CS)
  1. . S RORTBDTE=$$FM2HL^RORHL7($G(@RORREF@(0,22,"I")))
  1. . S RORTBAFS=$G(@RORREF@(0,24,"I"))
  1. . S RORTBQTY=$G(@RORREF@(0,25,"I"))
  1. . D SETOBX(RORID,,RORTBST,RORTBQTY,RORTBAFS,,RORTBDTE)
  1. ;
  1. ;--- Get Bact RPT Remark Data
  1. S RORID=$$SEGID("BACT","Bact",CS)
  1. S IEN=""
  1. F S IEN=$O(@RORREF@(4,IEN)) Q:'IEN D
  1. . S TMP=$G(@RORREF@(4,IEN,0,.01,"E"))
  1. . D:TMP'="" SETOBX(RORID,,TMP)
  1. ;
  1. ;--- Get Gram Stain Data
  1. S RORID=$$SEGID("GRAM","Gram Stain",CS)
  1. S IEN=""
  1. F S IEN=$O(@RORREF@(2,IEN)) Q:'IEN D
  1. . S TMP=$G(@RORREF@(2,IEN,0,.01,"E"))
  1. . D:TMP'="" SETOBX(RORID,,TMP)
  1. ;
  1. D ORGDATA ; Organism Data
  1. D PARDATA ; Parasite Data
  1. D FUNGUS ; Fungus/Yeast Data
  1. D MYCO ; Mycobacterium Data
  1. D VIRUS ; Virus Data
  1. D PARASP ; Parasitology Smear/Prep
  1. D BACSP ; Bacteriology Smear/Prep
  1. D MYCOSP ; Mycology Smear Prep
  1. D VIRORPT ; Virology RPT Remark
  1. ;
  1. ;--- Parasite Remark
  1. S RORID=$$SEGID("PARP","Parasite Remark",CS)
  1. S IEN=""
  1. F S IEN=$O(@RORREF@(7,IEN)) Q:IEN="" D
  1. . S TMP=$G(@RORREF@(7,IEN,0,.01,"E"))
  1. . D:TMP'="" SETOBX(RORID,,TMP)
  1. ;
  1. ;--- Specimen Comments
  1. S TMP=$G(@RORREF@(0,.99,"E"))
  1. I TMP'="" D D SETOBX(RORID,,TMP)
  1. . S RORID=$$SEGID("COMP","Specimen Comment",CS)
  1. ;
  1. Q $S(RC<0:RC,1:ERRCNT)
  1. ;
  1. ;***** PROCESSES ORGANISM DATA
  1. ORGDATA ;
  1. N IEN,RORANTID,RORCMID,RORID,RORMBC,RORMIC,RORORIEN,RORAINX,RORAINX1,RORANTIF,RORANTIO,TMP,TMP1
  1. S RORID=$$SEGID("ORG","Organism",CS)
  1. S RORCMID=$$SEGID("ORGC","Org Comment",CS)
  1. S RORANTID=$$SEGID("ORGA","Org Antibiotic",CS)
  1. S RORANTIF=$$SEGID("ORGAF","Org Antibiotic-F",CS)
  1. S RORANTIO=$$SEGID("ORGAO","Org Antibiotic-O",CS)
  1. ;---
  1. S RORORIEN=""
  1. F S RORORIEN=$O(@RORREF@(3,RORORIEN)) Q:'RORORIEN D
  1. . S TMP=$G(@RORREF@(3,RORORIEN,0,.01,"E"))
  1. . Q:TMP=""
  1. . D SETOBX(RORID,,TMP,$G(@RORREF@(3,RORORIEN,0,1,"I")))
  1. . ;---
  1. . S RORAINX=2
  1. . F S RORAINX=$O(@RORREF@(3,RORORIEN,0,RORAINX)) Q:'RORAINX!(RORAINX'<3) D
  1. . . S TMP=$G(@RORREF@(3,RORORIEN,0,RORAINX,"I")) Q:TMP?."^"
  1. . . D SETOBX(RORANTIF,$P(TMP,U),$P(TMP,U,2))
  1. . ;---
  1. . S RORAINX1=10
  1. . F S RORAINX1=$O(@RORREF@(3,RORORIEN,0,RORAINX1)) Q:'RORAINX1!(RORAINX1'<160) D
  1. . . S TMP=$G(@RORREF@(3,RORORIEN,0,RORAINX1,"I")) Q:TMP?."^"
  1. . . D SETOBX(RORANTIO,$P(TMP,U),$P(TMP,U,2))
  1. . ;---
  1. . S IEN=""
  1. . F S IEN=$O(@RORREF@(3,RORORIEN,1,IEN)) Q:IEN="" D
  1. . . S TMP=$G(@RORREF@(3,RORORIEN,1,IEN,0,.01,"E"))
  1. . . D:TMP'="" SETOBX(RORCMID,,TMP)
  1. . ;---
  1. . S IEN=""
  1. . F S IEN=$O(@RORREF@(3,RORORIEN,3,IEN)) Q:IEN="" D
  1. . . S TMP=$G(@RORREF@(3,RORORIEN,3,IEN,0,.01,"E"))
  1. . . Q:TMP=""
  1. . . S RORMIC=$G(@RORREF@(3,RORORIEN,3,IEN,0,1,"E"))
  1. . . S RORMBC=$G(@RORREF@(3,RORORIEN,3,IEN,0,2,"E"))
  1. . . D SETOBX(RORANTID,,TMP,,RORMIC,RORMBC)
  1. Q
  1. ;
  1. PARASP ;***** Parasitology Smear/Prep
  1. ;
  1. N RORPSPID,RORPSP
  1. S RORPSPID=$$SEGID("PARA-SP","Para Smear/Prep",CS)
  1. ;
  1. S RORPSP=""
  1. F S RORPSP=$O(@RORREF@(24,RORPSP)) Q:'RORPSP D
  1. . S TMP=$G(@RORREF@(24,RORPSP,0,.01,"E"))
  1. . D:TMP'="" SETOBX(RORPSPID,,TMP)
  1. Q
  1. ;
  1. ;***** PROCESSES PARASITE DATA
  1. PARDATA ;
  1. N IEN,RORPCMID,RORPSID,RORPSIEN,RORSTID,RORSTIEN,RORSTQAN,TMP
  1. S RORPSID=$$SEGID("PAR","Parasite",CS)
  1. S RORSTID=$$SEGID("PARQ","Stage",CS)
  1. S RORPCMID=$$SEGID("PARC","Comment",CS)
  1. ;---
  1. S RORPSIEN=""
  1. F S RORPSIEN=$O(@RORREF@(6,RORPSIEN)) Q:RORPSIEN="" D
  1. . S TMP=$G(@RORREF@(6,RORPSIEN,"0",".01","E"))
  1. . Q:TMP=""
  1. . D SETOBX(RORPSID,,TMP)
  1. . ;---
  1. . S RORSTIEN=""
  1. . F S RORSTIEN=$O(@RORREF@(6,RORPSIEN,1,RORSTIEN)) Q:RORSTIEN="" D
  1. . . S TMP=$G(@RORREF@(6,RORPSIEN,1,RORSTIEN,0,.01,"I"))
  1. . . Q:TMP=""
  1. . . S RORSTQAN=$G(@RORREF@(6,RORPSIEN,1,RORSTIEN,0,"1","E"))
  1. . . D SETOBX(RORSTID,,TMP,RORSTQAN)
  1. . . ;---
  1. . . S IEN=""
  1. . . F S IEN=$O(@RORREF@(6,RORPSIEN,1,RORSTIEN,1,IEN)) Q:IEN="" D
  1. . . . S TMP=$G(@RORREF@(6,RORPSIEN,1,RORSTIEN,1,IEN,0,.01,"E"))
  1. . . . D:TMP'="" SETOBX(RORPCMID,,TMP)
  1. Q
  1. ;
  1. ;***** CREATES SEGMENT IDENTIFIER
  1. SEGID(PONE,PTWO,CS) ;
  1. Q PONE_CS_PTWO_CS_"VA080"
  1. ;
  1. ;***** CREATES AND STORES THE OBX SEGMENT
  1. SETOBX(OBX3,OBX4,OBX5,OBX6,OBX7,OBX13,OBX14) ;
  1. N RORSEG
  1. ;--- Initialize the segment
  1. S RORSEG(0)="OBX"
  1. ;--- OBX-2
  1. S RORSEG(2)="FT"
  1. ;--- OBX-3
  1. S RORSEG(3)=OBX3
  1. ;--- OBX-4, OBX-5, OBX-6, and OBX-7
  1. S:$G(OBX4)'="" RORSEG(4)=$$ESCAPE^RORHL7(OBX4)
  1. S:$G(OBX5)'="" RORSEG(5)=$$ESCAPE^RORHL7(OBX5)
  1. S:$G(OBX6)'="" RORSEG(6)=$$ESCAPE^RORHL7(OBX6)
  1. S:$G(OBX7)'="" RORSEG(7)=$$ESCAPE^RORHL7(OBX7)
  1. ;--- OBX-11
  1. S RORSEG(11)="F"
  1. ;--- OBX-13 and OBX-14
  1. S:$G(OBX13)'="" RORSEG(13)=$$ESCAPE^RORHL7(OBX13)
  1. S:$G(OBX14)'="" RORSEG(14)=OBX14
  1. ;--- Store the segment
  1. D ADDSEG^RORHL7(.RORSEG)
  1. Q
  1. ;
  1. VIRORPT ;***** Virology RPT Remark
  1. N RORVRID,RORVRIEN
  1. S RORVRID=$$SEGID("VIRUSR","Virology RPT",CS)
  1. ;
  1. S RORVRIEN=""
  1. F S RORVRIEN=$O(@RORREF@(18,RORVRIEN)) Q:'RORVRIEN D
  1. . S TMP=$G(@RORREF@(18,RORVRIEN,0,.01,"E"))
  1. . D:TMP'="" SETOBX(RORVRID,,TMP)
  1. Q
  1. ;
  1. VIRUS ;***** Virus
  1. ;
  1. N RORVIRID,RORVIIEN
  1. S RORVIRID=$$SEGID("VIRUS","Virus",CS)
  1. ;
  1. S RORVIIEN=""
  1. F S RORVIIEN=$O(@RORREF@(17,RORVIIEN)) Q:'RORVIIEN D
  1. . S TMP=$G(@RORREF@(17,RORVIIEN,0,.01,"E"))
  1. . D:TMP'="" SETOBX(RORVIRID,,TMP)
  1. Q